创建并附加到SQLAlchemy数据库表中的列表
我有一个包含两列的excel文件:
first_name alias
paul patrick
john joe
simon simo
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我正在学习SQLAlchemy而且我被困住了.我有一个SQL表(table1)有两个字段:'name'和'other_names' 我有一个包含两列的excel文件: first_name alias paul patrick john joe simon simone john joey john jo 我想将excel文件读入我的table1创建数据库表,所以它看起来像这样(即同一行的所有别名都在一行): paul patrick john joe,joey,jo simon simone 这是我试图做的想法.我试过的代码(带注释): for line in open('file.txt', 'r'): #for each line in the excel file
line = line.strip().split('\t') #split each line with a name and alias
first_name = line[0] #first name is the name before the tab
alias = line[1] #alias is the name after the tab
instance =
Session.query(session,tbs['table1'].name).filter_by(name=first_name) #look through the database table, by name field, and see if the first name is there
list_instance = [x[0] for x in instance] #make a list of first names already in database table
if first_name not in list_instance: #if the excel first name is not in the database table
alias_list = [] #make an empty list
alias_list.append(alias) #append the alias
name_obj = lib.get_or_create( #small function to make db object
session,
tbs["table1"],
name = first_name, #add first name to the name field
other_names = alias_list # add alias list to the other_names field
)
elif first_name in list_instance: #elif first name already in db
alias_list.append(alias) #append the alias to the alias list made above
name_obj = lib.get_or_create(
session,
tbs["table1"],
name = first_name,
other_names = alias_list #create object as before, but use updated alias list
)
问题是我可以让上面的代码运行没有错误,但输出也不是附加列表,它只是一个看起来像excel文件的数据库表; 即 name alias paul patrick john joe simon simone john joey john jo 有人可以指出我哪里出错了,具体来说,我该如何修改这段代码?如果问题不清楚,请告诉我,我试着把它作为一个简单的例子.具体来说,如何初始化并将列表添加为SQLalchemy db表中的字段条目. 更新1:我已根据下面的实际建议更新了我的代码.但是我仍然有这个问题.这是完整的目标,代码和测试文件:目标: 我在数据库中有一个表(参见下面的测试文件进入表格).该表有两个字段,名称(拉丁名称,例如智人)和其他名称(常用名称,例如人,人).我想更新表中的字段(其他名称),所以不要: Rana rugosa human Rana rugosa man Rana rugosa frog Rana rugosa cow 我有: Rana rugosa human,man,frog,cow test_data文件如下所示: origin_organism common_name tested_organism Rana rugosa human - Rana rugosa man - Rana rugosa frog homo sapiens Rana rugosa cow Rana rugosa Rana rugosa frog Rana rugosa Rana rugosa frog - Rana rugosa frog - Rana rugosa frog homo sapiens - - - - - homo sapiens - - - - - - - - - - - - streptococcus pneumoniae - - 代码: import sys
from sqlalchemy.orm import *
from sqlalchemy import *
from dbn.sqlalchemy_module import lib
import pd
engine = lib.get_engine(user="user", psw="pwd", db="db", db_host="111.111.111.11")
Base = lib.get_automapped_base(engine)
session = Session(engine)
tbs = lib.get_mapped_classes(Base)
session.rollback()
df = pd.read_excel('test_data.xlsx', sheet_name = 'test2')
for index, row in df.iterrows():
origin_latin_name = row['origin_organism'].strip().lower()
other_names_name = row['common_name'].strip().lower()
tested_species = row['tested_organism'].strip().lower()
if origin_latin_name not in [None, "None", "", "-"]:
instance = [x[0] for x in Session.query(session,tbs['species'].name).filter_by(name=origin_latin_name).all()]
if origin_latin_name not in instance:
origin_species = lib.get_or_create(
session,
tbs["species"],
name = origin_latin_name,
other_names = other_names_name
)
elif origin_latin_name in instance:
other_names_query = Session.query(session,tbs['species'].other_names).filter_by(name=origin_latin_name)
other_names_query_list = [x for x in other_names_query]
original_list2 = list(set([y for y in x[0].split(',') for x in other_names_query_list]))
if other_names_name not in original_list2:
original_list2.append(other_names_name)
new_list = ','.join(original_list2)
new_names = {'other_names':','.join(original_list2)}
origin_species = lib.get_or_create(
session,
tbs["species"],
name = origin_latin_name,
other_names = new_list
)
elif语句中的部分不起作用.我遇到了两个问题: (1)我得到的最新错误:NameError:未定义名称"new_list" (2)我得到的另一个错误是我还有另一张表 map1 = lib.get_or_create(
session,
tbs["map1"],
age_id_id = age,
name_id_id = origin_species.id
)
...并且它说找不到origin_species,但我认为这与elif语句有关,不知道origin_species对象是不是正确更新了. 如果有人可以提供帮助,我会很感激. (编辑:沈阳站长网) 【声明】本站内容均来自网络,其相关言论仅代表作者个人观点,不代表本站立场。若无意侵犯到您的权利,请及时与联系站长删除相关内容! |
